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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 84045 REL 30: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD RM&E
Project Number:
Title:
IDFG Genetic Monitoring of Snake River Steelhead & Chinook Salmon
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Blue Mountain Grande Ronde 20.00%
Imnaha 20.00%
Columbia Plateau Snake Lower 20.00%
Mountain Snake Clearwater 20.00%
Salmon 20.00%
Contract Number:
84045 REL 30
Contract Title:
2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD RM&E
Contract Continuation:
Previous: Next:
84045 REL 14: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
  • CR-374459: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Status:
Issued
Contract Description:
In 2010, Idaho Department of Fish and Game in collaboration with the Columbia River Inter-Tribal Fish Commission, initiated two BPA-funded projects (2010-026-00 and 2010-031-00) to test and implement genetic monitoring programs for Snake River basin Chinook Salmon and steelhead utilizing two genetic technologies. The first technology is called Parentage-based tagging (PBT) and involves the annual sampling and genotyping of all hatchery broodstock, creating a genetic baseline of candidate parents.  The genotyping of broodstock permanently genetically “tags” all of their offspring. A non-lethal tissue sample from any of these offspring can be genotyped and analyses can be completed to assign parentage, thereby identifying hatchery of origin and age. The second technology is called Genetic Stock Identification (GSI), and involves creating a reference genetic baseline from all contributing wild stocks.  Wild fish of unknown origin can then be sampled and genotyped, with a genetic assignment test used to identify their stock of origin.  Over the last decade, these projects have demonstrated the accuracy, efficiency, and utility of these technologies for monitoring both wild and hatchery stocks throughout the Snake River and Columbia River basins.  For hatchery stocks, PBT addresses Fish and Wildlife Program objectives that involve marking hatchery stocks, conducting hatchery evaluations and reform, and enforcing salmonid fishery management measures.  For wild stocks, GSI provides unprecedented tools for monitoring wild stock abundance, productivity and genetic diversity, which are required for NOAA ESA status assessments. These two projects were combined by BPA in 2021, with ongoing goals of keeping PBT and GSI baselines up-to-date in the Snake River basin, to maintain and enhance SNP genetic marker panels, and to continue projects that use these PBT and GSI baselines to address conservation and management issues of importance to the Council and state, tribal and federal fisheries managers.
Account Type(s):
Expense
Contract Start Date:
07/01/2024
Contract End Date:
06/30/2025
Current Contract Value:
$1,859,356
Expenditures:
$822,612

* Expenditures data includes accruals and are based on data through 31-Dec-2024.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Pricing Method:
Cost Reimbursement (CNF)
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Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Provide EC Lead with description of this work element related to all objectives. B: 165. Environmental Compliance Documentation 07/03/2024 07/03/2024
Effective implementation management and timely contract administration C: 119. Obj. 1-8, Manage/Administer Projects 06/30/2025
Completed Progress (Annual) Report D: 132. Obj. 1-8, Submit Progress Report for the period (1/1/2024) to (12/31/2024) 05/31/2025
Communicate with collaborating labs. E: 189. OBJ 1: Evaluate and maintain SNPS 06/30/2025
Produce accessible, error-checked datasets F: 157. OBJ 1: Evaluate and maintain SNPS 06/28/2025
Genetic marker data to database G: 161. OBJ 1: Evaluate and maintain SNPs 06/28/2025
New GSI methods and techniques H: 156. OBJ 2: GSI Baseline maintenance and expansion 06/28/2025
New baselines will be tested and developed I: 162. OBJ 2: GSI Baseline maintenance and expansion 06/28/2025
Genotypes and allele frequencies for baseline populations will be made available J: 161. OBJ 2: GSI Baseline maintenance and expansion 06/28/2025
GSI baselines to database K: 159. OBJ 2: GSI Baseline maintenance and expansion 06/28/2025
Baseline maintenance completed. As needed, updates to FishGen will occur. L: 189. OBJ 3: PBT Baseline maintenance 06/28/2025
Produce accessible, error-checked datasets M: 157. OBJ 3: PBT Baseline maintenance 06/28/2025
Produce accessible, error-checked datasets N: 157. OBJ 3: PBT Baseline maintenance 06/28/2025
Summarize broodstock numbers and sampling information O: 161. OBJ 3: PBT Baseline maintenance 06/28/2025
Produce accessible, error-checked datasets P: 157. OBJ 3: PBT Baseline maintenance 06/28/2025
Parentage results and estimates of pHOS or PNI Q: 161. OBJ 3: PBT Baseline maintenance 06/28/2025
Deliverable: An accessible, error-checked data set with metadata R: 162. Baseline maintenance 06/28/2025
Transfer data S: 159. OBJ 3: PBT Baseline maintenance 06/28/2025
As needed, Review, revise, and publish new Study Plan and Methods in monitoringmethods.org T: 156. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2025
Produce accessible, error-checked datasets U: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2025
Produce accessible, error-checked datasets V: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2025
Transfer Genotypes to Regional Genetic Data Repository W: 159. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2025
Deliverable: PBT and GSI assignments X: 162. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2025
PBT and GSI results will be uploaded to the LGR database. Y: 161. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2025
Produce accessible, error-checked datasets Z: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2025
Produce accessible, error-checked datasets AA: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2025
Transfer/Consolidate data. AB: 159. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2025
Deliverable: An accessible, error-checked data set with metadata AC: 162. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2025
Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries AD: 161. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2025
Integrated Hatchery Monitoring AE: 156. OBJ 6: Integrated Hatchery Monitoring 06/30/2025
Produce accessible, error-checked datasets AF: 157. OBJ 6: Integrated Hatchery Monitoring 06/28/2025
Produce accessible, error-checked datasets AG: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2025
Produce accessible, error-checked datasets AH: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2025
Deliverable: An accessible, error-checked data set with metadata AI: 162. OBJ 6: Integrated Hatchery Monitoring 06/30/2025
Integrated Hatchery Monitoring AJ: 161. OBJ 6: Integrated Hatchery Monitoring 06/30/2025
Environmental compliance requirements complete AK: 156. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2025
Deliverable: An accessible, error-checked data set with metadata AL: 162. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2025
Genetic diversity and life history characteristics of adults detected at PIT tag array AM: 161. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2025
Analyzed data on false-negative and false-positive rates and proportion produced from hatchery adults spawning in the wild AN: 162. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/30/2025
Estimates of false-positive and false-negative error rates and the proportion of Snake River Fall Chinook Salmon hatchery adults spawning in the wild AO: 161. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/28/2025

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 2 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer ESU (Threatened)
  • 10 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 8 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 5 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer (not listed)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 5 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 3 instances of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Snake River DPS (Threatened)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 6 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA
B 165 Environmental Compliance Documentation
C 119 Obj. 1-8, Manage/Administer Projects
D 132 Obj. 1-8, Submit Progress Report for the period (1/1/2024) to (12/31/2024)
E 189 OBJ 1: Evaluate and maintain SNPS
F 157 OBJ 1: Evaluate and maintain SNPS 07/01/2024
G 161 OBJ 1: Evaluate and maintain SNPs
H 156 OBJ 2: GSI Baseline maintenance and expansion 07/01/2024
I 162 OBJ 2: GSI Baseline maintenance and expansion
J 161 OBJ 2: GSI Baseline maintenance and expansion
K 159 OBJ 2: GSI Baseline maintenance and expansion
L 189 OBJ 3: PBT Baseline maintenance
M 157 OBJ 3: PBT Baseline maintenance 07/01/2024
N 157 OBJ 3: PBT Baseline maintenance 07/01/2024
O 161 OBJ 3: PBT Baseline maintenance
P 157 OBJ 3: PBT Baseline maintenance 07/01/2024
Q 161 OBJ 3: PBT Baseline maintenance
R 162 Baseline maintenance
S 159 OBJ 3: PBT Baseline maintenance
T 156 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2024
U 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2024
V 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2024
W 159 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
X 162 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Y 161 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Z 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2024
AA 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2024
AB 159 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AC 162 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AD 161 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AE 156 OBJ 6: Integrated Hatchery Monitoring 07/01/2024
AF 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2024
AG 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2024
AH 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2024
AI 162 OBJ 6: Integrated Hatchery Monitoring
AJ 161 OBJ 6: Integrated Hatchery Monitoring
AK 156 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 07/01/2024
AL 162 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AM 161 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AN 162 OBJ 8. Developing Grandparentage Technology in the Snake River Basin
AO 161 OBJ 8. Developing Grandparentage Technology in the Snake River Basin